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CLC Combined Workbench

Bioinformatics program for advanced DNA and protein sequence analysis



  • Downloads:53
  • Last update:Dec 8, 2007
  • Version:3.0.3
  • License:Trial
  • Publisher:CLC bio
  • System Requirements Windows All

Free Download ( 53.7 MB )

CLC Combined Workbench

Bioinformatics program or advanced DNA and protein sequence analysisCLC Combined Workbench is an useful program that aggregates all eatures o CLC Free Workbench, CLC Protein Workbench, and CLC Gene Workbench in one integrated software package.

CLC Combined Workbench creates a software environment enabling users to make a large number o advanced protein sequence analyses, combined with smooth data management, and excellent graphical viewing and output options.

Here are some key eatures o "CLC Combined Workbench":

  • Full integration o data input, data management, calculation results, and data export
  • Detailed history log
  • All types o iles can be saved in local projects, and launched rom the program
  • Import and export o data in a large number o ile ormats
  • Option o working in several active workspaces at a time, enabling simultaneous work on multiple projects
  • Import o trace data iles and quality scores rom automated DNA sequening machines using Standard Chromatogram Format, ABI ormats and PHD ormat (PHRED)
  • 3D molecule view
  • Transmembrame helix prediction
  • Antigenicity
  • Secondary protein structure prediction
  • PFAM domain search
  • Web-based prediction o signal peptides and their cleavage sites (SignalP - the best tool available)
  • Hydrophobicity analyses and graphs
  • Protein charge analysis and graphs
  • Reverse translation rom protein to gene (a number o translation tables)
  • Interactive translations o DNA and RNA to protein (both single sequences and alignments)
  • Proteolytic cleavage detection
  • Report o protein statistics (one or more proteins in each report)
  • Comprehensive report including a range o protein analyses in one document
  • Integrated UniProt searches (Swiss-Prot/TrEMBL)
  • Web-based lookup o sequence data in the UniProt and NCBI databases, as well as Google
  • Editor or graphically and algorithmically advanced primer design
  • Assembly o DNA sequence data
  • Molecular cloning
  • Automatic SNP annotation o sequences
  • Search and discovery o DNA patterns
  • Local complexity region analyses
  • Reverse translation rom protein to gene, based on translation tables rom a number o species
  • Advanced restriction enzyme analysis and management
  • Dot plot based analyses
  • Short orm DNA statistics including a number o characteristics o a given molecule
  • NCBI sequence data search
  • Access to web info rom PubMed
  • DNA, RNA and protein sequence editor displaying both linear and circular molecules
  • DNA, RNA, and protein alignment editor
  • Interactive logos along both DNA, RNA and Protein alignments
  • Batch processing o analyses on multiple sequences in one work-step
  • Moti search
  • Pattern discovery (unknown patterns)
  • Advanced re-alignment and ix-point alignment option
  • Sequence logo graphs along DNA, RNA, and protein alignments
  • Manual annotation o sequences
  • Integrated PubMed searches
  • Web-based sequence search using BLAST
  • Dot plot based analyses
  • Local complexity region analyses and complexity plots
  • Gap raction graphs
  • G/C content analysis and graphs
  • Advanced BLAST view
  • Advanced graphs view
  • Advanced histogram view
  • Advanced dot plot view
  • Search or characteristics in sequences and alignments


    Requirements:
  • 256 MB RAM required
  • 512 MB RAM recommended
  • 1024x768 screen resolution
  • Java Runtime Environment 1.4 or higher
  • 3D viewing requires an OpenGL 3D graphics driver


    Limitations:
  • 4 weeks ully unctional trial

    • Free Download ( Evaluation | 53.7 MB )

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    Free Download CLC Combined Workbench

    Free Download ( Evaluation | 53.7 MB )